PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG269000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 373aa    MW: 40146.9 Da    PI: 7.8993
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG269000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC68.86.9e-22131174245
                  WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                           epgrCrRtDGKkWRCsr++++++k+CErH++r+++rsrk++e+
  Pavir.8KG269000.1.p 131 VEPGRCRRTDGKKWRCSRDAIGDQKYCERHIKRNCHRSRKHVES 174
                          59***************************************996 PP

2QLQ575.8e-2070106137
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++
  Pavir.8KG269000.1.p  70 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIKR 106
                          59*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-1270106IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-1371104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.30871106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.893130174IPR014977WRC domain
PfamPF088792.9E-17132173IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
METSRDGFFG AAERASPPPP PPSCSFLGSA AAAAGSGGAR MLSFSSSGAA GLGLSSGASK  60
MQGVLSRVRG PFTPTQWMEL EHQALIYKHF AVNAPVPSSL LLPIKRSINP WSGLGSSSLG  120
WTVFPPGSGD VEPGRCRRTD GKKWRCSRDA IGDQKYCERH IKRNCHRSRK HVESRKATPT  180
IAEPSLAVSG GPSLPSYAVP WQQQVKSSAA NVTDPFSRES NRKLLEKQNV HSQLSVSTPM  240
DSFNFSTSGS SQNRDIVALS PVEFQHDHDQ AYLVHGVGSS AENDNELQES LLLVSKETLD  300
DGPLGEVFKS KSCQSAYADI LTDQWTATRD MHSPTGILQL SNSNTMPLEN HINSNDYLMA  360
TMVNAQTVPT FL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79300.0callus| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979454.10.0PREDICTED: growth-regulating factor 8-like
SwissprotQ6AWY11e-150GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLK3ZJC70.0K3ZJC7_SETIT; Uncharacterized protein
STRINGSi026680m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-41growth-regulating factor 2